/***************************************************************************
 *   Copyright (C) 2007 by Alexandre Masselot,,,   *
 *   alex@alex-laptop   *
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU Library General Public License as       *
 *   published by the Free Software Foundation; either version 2 of the    *
 *   License, or (at your option) any later version.                       *
 *                                                                         *
 *   This program is distributed in the hope that it will be useful,       *
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
 *   GNU General Public License for more details.                          *
 *                                                                         *
 *   You should have received a copy of the GNU Library General Public     *
 *   License along with this program; if not, write to the                 *
 *   Free Software Foundation, Inc.,                                       *
 *   59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.             *
 ***************************************************************************/
#ifndef DBSEQUENCE_H
#define DBSEQUENCE_H
#include <string>
#include "peptide.h"
/**
Database sequence
AC
description
peptide (the whole sequence)

	@author Alexandre Masselot,,, <alex@alex-laptop>
*/
namespace bol{
class DBSequence{
  string m_ac;
  string m_description;
  Peptide *m_sequence;
public:
    DBSequence();

    ~DBSequence();

  /**
   * set the accession code
   */
  void setAc(const string& theValue) {
      m_ac = theValue;
  }
  

  /**
   * 
   * @return  sequence accession code
   */
  string ac() const {
      return m_ac;
  }

  /**
   * set the entry description
   */
  void setDescription(const string& theValue) {
      m_description = theValue;
  }
  

  /**
   * 
   * @return sequence description
   */
  string description() const {
      return m_description;
  }

  /**
   * set the entry as a peptide type (reduce aa, see Peptide class) sequence
   */
  void setSequence(Peptide* theValue) {
      m_sequence = theValue;
  }
  

  /**
   * 
   * @return the whole sequence (reduced aa, see Peptide class)
   */
  Peptide* sequence() const {
      return m_sequence;
  }
  
  
  

};
}
#endif
